James M. Tiedje, Primary Publications (1989-1993):

  1. Rice, C.W. and J.M. Tiedje. 1989. Regulation of nitrate assimilation by ammonium in soils and in isolated soil microorganisms. Soil Biol. Biochem. 21:597-602.

  2. Groffman, P.M. and J.M. Tiedje. 1989. Denitrification in north temperate forest soils: relationships between denitrification and environmental factors at the landscape scale. Soil Biol. Biochem. 21:621-626.

  3. Groffman, P.M. and J.M. Tiedje. 1989. Denitrification in north temperate forest soils: spatial and temporal patterns at the landscape and seasonal scales. Soil Biol. Biochem. 21:613-620.

  4. Coyne, M.S., A. Arunakumari, B.A. Averill, and J.M. Tiedje. 1989. Immunological identification and distribution of dissimilatory heme cd1 and nonheme copper nitrite reductases in denitrifying bacteria. Appl. Environ. Microbiol. 55:2924-2931. [PubMed]

  5. Jansson, J.K., W.E. Holben, and J.M.Tiedje. 1989. Detection in soil of a deletion in an engineered DNA sequence by using DNA probes. Appl. Environ. Microbiol. 55:3022-3025. [PubMed]

  6. Linkfield, T.G., J.M. Sulfita, and J.M. Tiedje. 1989. Characterization of the acclimation period before anaerobic dehalogenation of halobenzoates. Appl. Environ. Microbiol. 55:2773-2778. [PubMed]

  7. Tiedje, J.M., S. Simkins, and P.M. Groffman. 1989. Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods. Plant and Soil 115:261-284.

  8. Tiedje, J.M., R.K. Colwell, Y.L. Grossman, R.E. Hodson, R.E. Lenski, R.N. Mack, and P.J. Regal. 1989. The planned introduction of genetically engineered organisms: ecological considerations and recommendations. Ecology 70:297-315.

  9. Hulse, C.L., J.M. Tiedje, and B.A. Averill. 1989. Evidence for a copper-nitrosyl intermediate in denitrification by the copper-containing nitrite reductase of Achromobacter cycloclastes. J. Am. Chem. Soc. 111:2322.

  10. Zak, D.R., P.M. Groffman, K.S. Pregitzer, S. Christensen, and J.M. Tiedje. 1990. The vernal dam:plant-microbe competition for nitrogen in northern hardwood forests. Ecology 71:651-656.

  11. Linkfield, T.G. and J.M. Tiedje. 1990. Characterization of the requirements and substrate for reductive dehalogenation by strain DCB-1. J. Indust. Microbiol. 5:9-15. [PubMed]

  12. Coyne, M.S. and J.M. Tiedje. 1990. Induction of denitrifying enzymes in oxygen-limited Achromobacter cycloclastes in continuous culture. FEMS Microbial Ecology 73:263-270.

  13. Mohn, W.W. and J.M. Tiedje. 1990. Strain DCB-1 conserves energy for growth from reductive dechlorination coupled to formate oxidation. Arch. Microbiol. 153:267-271. [PubMed]

  14. Mohn, W.W., T.G. Linkfield, H.S. Pankratz, and J.M.Tiedje. 1990. Involvement of a cellular structure in polar growth and cell division of strain DCB-1. Appl. Environ. Microbiol. 56:1206-1211.

  15. Mohn, W.W. and J.M. Tiedje. 1990. Catabolic thiosulfate disproportionation and carbon dioxide reduction by strain DCB-1, the reductively dechlorinating anaerobe. J. Bacteriol. 172:2065-2070. [PubMed]

  16. Coyne, M.S. and J.M. Tiedje. 1990. Distribution and diversity of dissimilatory NO2- reductases in dentrifying bacteria. In Denitrification in Soil and Sediment. J. Sorensen and N.P. Revsbech, ed., Plenum Press, N.Y. p. 21-35.

  17. Coyne, M.S., A. Arunakamari, H.S. Pankratz, and J. M. Tiedje. 1990. Localization of the cytochrome cd1 copper nitrite reductases in denitrifying bacteria. J. Bacteriol. 172:2558-2562. [PubMed]

  18. Christensen, S. and J.M. Tiedje. 1990. Brief and vigorous N2O production by soil at spring thaw. J. Soil Sci. 41:1-4.

  19. Tiedje, J.M. 1990. Ecological principles and experiences in the environmental release of genetically engineered organisms. In Advances in Biotechnology. Proceedings of Int'l Conf., Swedish Council for Forestry and Agricultural Research and Swedish Recombinant DNA Advisory Comm., pp. 115-130, SJFR, Stockholm.

  20. Quensen, J.F. III, S.A. Boyd and J.M. Tiedje. 1990. Dechlorination of four commercial polychlorinated biphenyl mixtures (Aroclors) by anaerobic microorganisms from sediments. Appl. Environ. Microbiol. 56:2360-2369.

  21. Christensen, S., S. Simkins and J.M. Tiedje. 1990. Spatial variation in soil denitrification: occurrence of activity centers (hot spots) as influenced by the soil environment. Soil Sci. Soc. Am. J. 54:1608-1618.

  22. Christensen, S., S. Simkins and J.M. Tiedje. 1990. Temporal patterns of soil denitrification: their stability and causes. Soil Sci. Soc. Am. J. 54:1614-1618.

  23. Hasebe, A., W.E. Holben, and J.M. Tiedje. 1990. Effect of percolation on vertical movements of the inoculated bacteria in soil. Soil Microorganisms 35:31-34 (In Japanese).

  24. Tiedje, J.M., W.E. Holben, W.W. Mohn, and J.F. Quensen III. 1990. Role of microorganisms in the protection of the environment. (Plenary lecture). Transact. 14th Int'l Congress of Soil Science, Kyoto, Japan; Int'l Soc. Soil Sci, VIII, 3-14.

  25. Dolfing, J., and J.M. Tiedje. 1991. Influence of substituents on reductive dehalogenation of 3-chlorobenzoate analogs. Appl. Environ. Microbiol. 57:820-824.

  26. Groffman, P., and J.M. Tiedje. 1991. Relationships between denitrification, CO2 production and air-filled porosity in soils of different texture and drainage. Soil Biol. Biochem. 23:229-302.

  27. Weeg-Aerssens, E., W. Wu, R.W. Ye, J.M. Tiedje, and C.K. Chang. 1991. Purification of cytochrome cd1 nitrite reductase from Pseudomonas stutzeri JM300 and reconstitution with native and synthetic heme d1. J. Biol. Chem. 266:7496-7502. [PubMed]

  28. Ye, R.W., I. Toro-Suarez, J.M. Tiedje, and B.A. Averill. 1991. H218O isotope exchange studies on the mechanism of reduction of nitric oxide and nitrite to nitrous oxide by denitrifying bacteria: evidence for an electrophilic nitrosyl during reduction of nitric oxide. J. Biol. Chem. 266:12848-12851. [PubMed]

  29. Knight, I.T., W.E. Holben, J.M. Tiedje, and R.R. Colwell. 1991. Nucleic acid hybridization techniques for detection, identification and enumeration of microorganisms in the environment, p. 65-91. In M.A. Levin, R.J. Seidler and M. Rogal (eds.), Microbial Ecology: Principles, Methods and Applications, McGraw-Hill, Inc., New York, NY.

  30. Dolfing, J., and J.M. Tiedje. 1991. Acetate as a source of reducing equivalents in the reductive dechlorination of 2,5-dichlorobenzoate. Arch. Microbiol. 156:356-361.

  31. Dolfing, J., and J.M. Tiedje. 1991. Kinetics of two complementary hydrogen sink reactions in a defined 3-chlorobenzoate degrading methano-genic co-culture. FEMS Microbiol. Ecol. 86:25-32.

  32. Tiedje, J.M., J.F. Quensen, III, W.W. Mohn, J.P. Schimel, J.A. Cole, and S.A. Boyd. 1991. Reductive dechlorination of chlorinated aromatic pollutants, p. 292-307. In: R.W. Rossmoore (ed.), Biodeterioration and Biodegradation 8, Elsevier Applied Science, New York, NY.

  33. Jackson, M.A., J.M. Tiedje, and B.A. Averill. 1991. Evidence for an NO-rebound mechanism for production of N2O from nitrite by the copper-containing nitrite reductase from Achromobacter cycloclastes. FEBS Letters 291:41-44. [PubMed]

  34. Mohn, W.W., and J.M. Tiedje. 1991. Evidence for chemiosmotic coupling of reductive dechlorination and ATP synthesis in Desulfomonile tiedjei. Arch. Microbiol. 157:1-6.

  35. Tiedje, J.M., J.K. Jansson, W.W. Mohn, W.E. Holben, and J.F. Quensen, III. 1991. Biotechnology for biodegradation and reductive dechlorination and nucleic acid probe tracking methods, 84-106. In L. Golovleva (ed.), Microbial degradation of xenobiotics. USSR Academy of Sciences, Pushchino, Russia.

  36. Groffman, P.M., J.M. Tiedje, D.L. Mokma, and S. Simkins. 1992. Regional scale analysis of denitrification in north temperate forest soils. Landscape Ecol. 7:45-53.

  37. Smith, G.B., and J.M. Tiedje. 1992. Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. Appl. Environ. Microbiol. 58:376-384. [PubMed]

  38. Griffith, G.D., J.R. Cole, J.F. Quensen, III, and J.M. Tiedje. 1992. Specific deuteration of dichlorobenzoate during reductive dehalogenation by Desulfomonile tiedjei in D2O. Appl. Environ. Microbiol. 58:409-411. [PubMed]

  39. Ye, D., J.F. Quensen, III, J.M. Tiedje, and S.A. Boyd. 1992. Anaerobic dechlorination of PCBs (Aroclor 1242) by pasteurized and ethanol treated microorganisms from sediments. Appl. Environ. Microbiol. 58:1110-1114. [PubMed]

  40. Ye, R.W., A. Arunakumari, B.A. Averill, and J.M. Tiedje. 1992. Mutants of Pseudomonas fluorescens deficient in dissimilatory nitrite reduction are also altered in nitric oxide reduction. J. Bacteriol. 174:2560-2564. [PubMed]

  41. Mohn, W.W. and J.M. Tiedje. 1992. Microbial reductive dehalogenation. Microbiol. Reviews, 56:482-507. [PubMed]

  42. Ye, R.W., B.A. Averill, and J.M. Tiedje. 1992. Characterization of Tn5 mutants deficient in dissimilatory nitrite reduction in Pseudomonas sp. strain G-179, which contains a copper nitrite reductase. J. Bacteriol. 174:6653-6658. [PubMed]

  43. Morris, P.J., W.W. Mohn, J.F. Quensen, III, J.M. Tiedje and S.A. Boyd. 1992. Establishment of a polychlorinated biphenyl-degrading enrichment culture with predominantly meta dechlorination. Appl Environ. Microbiol. 58:3088-3094. [PubMed]

  44. Morris, P.J., J.F. Quensen, III, J.M. Tiedje and S.A. Boyd. 1992. Reductive debromination of the commercial polybrominated biphenyl mixture firemaster BP6 by anaerobic microorganisms from sediments. Appl. Environ. Microbiol. 58:3249-3256. [PubMed]

  45. Holben, W.E., B.M. Schroeter, V.G.M. Calabrese, R.H. Olsen, J.K. Kukor, V.O. Biederbeck, A.E. Smith and J.M. Tiedje. 1992. Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid (2,4-D). Appl. Environ. Microbiol. 58:3941-3948. [PubMed]

  46. Sanford, R.A. and J.M. Tiedje. 1992. Biodegradation of 2,4-D and chlorophenols under denitrifying conditions in soil column, microaerobic and anoxic enrichments, 543-548. In Soil Decontamination Using Biological Processes: International Symposium, Karlsruhe, Germany, DECHEMA, Frankfurt am Main.

  47. Quensen III, J.F., J.M. Tiedje, S.A. Boyd, C. Enke, R. Lopshire, J. Giesy, M. Mora, R. Crawford, and D. Tillitt. 1992. Evaluation of the suitability of reductive dechlorination for the bioremediation of pcb-contaminated soils and sediments, 91-100. In Soil Decontamination Using Biological Processes: International Symposium, Karlsruhe, Germany, DECHEMA, Frankfurt am Main.

  48. Tiedje, J.M., J.F. Quensen III, J. Chee-Sanford, J.P. Schimel, and S.A. Boyd. 1993. Microbial reductive dechlorination of PCBs. Biodegradation 4:231-240. [PubMed]

  49. Ye, R.W., M.R. Fries, S.B. Bezborodnikov, B.A. Averill and J.M. Tiedje. 1993. Characterization of the structural gene for a copper containing nitrite reductase and its homology to other denitrifiers. Appl. Environ. Microbiol. 59:250-254. [PubMed]

  50. Groffman, P.M., D.R. Zak, S. Christensen, A. Mosier and J.M. Tiedje. 1993. Early spring nitrogen dynamics in a temperate forest landscape. Ecology. 74(5):1579-1585.

  51. Groffman, P.M., C.W. Rice, J.M. Tiedje. 1993. Denitrification in a tallgrass prairie landscape. Ecology 74(3):855-862.

  52. Jordan, D., C.W. Rice, J.M. Tiedje. 1993. The effect of suppression treatments on the uptake of 15N by intercropped corn from labeled alfalfa (Medicago sativa). Biol. Fertil. Soils 16:221-226.

  53. Jorgensen, K.S. and J.M. Tiedje. 1993. Survival of denitrifiers in nitrate-free, anaerobic environments. Appl. Environ. Microbiol. 59:3297-3305.

  54. Morris, P.J., J.F. Quensen, III, J.M. Tiedje and S.A. Boyd. 1993. An assessment of the reductive debromination of polybrominated biphenyls in the Pine River Reservoir. Environ. Sci. Technol. 27:1580-1586.

  55. Tiedje, J.M. 1993. Bioremediation from an ecological perspective. p. 110-120. In In situ Bioremediation: when does it work? National Academy Press, Washington, D.C.

  56. Tiedje, J.M. 1993. (Editor) Environmental biotechnology issue, Current Opinion in Biotechnology, 4(3):273-362.

  57. Tiedje, J.M., M. Fries and J. Chee-Sanford. 1993. Is bioremediation of BTEX contaminated soils and aquifers possible under anaerobic conditions. Sec II, In Pacific Basin Conference on Hazardous Wastes, 1993 Proceedings, East-West Center, Honolulu, Hawaii.

  58. Holben, W.E., V.G.M. Calabrese, D. Harris, J.O. Ka and J.M. Tiedje. 1993. Analysis of structure and selection in microbial communities by molecular methods. pp. 367-370. In R. Guerrero and C. Pedros-Alio (eds.), Trends in Microbial Ecology, Spanish Society for Microbiology, Barcelona, Spain.

  59. Klug, M.J. and J.M. Tiedje. 1993. Response of microbial communities to changing environmental conditions: chemical and physiological approaches. pp. 371-374. In R. Guerrero and C. Pedros-Alio (eds.), Trends in Microbial Ecology, Spanish Society for Microbiology, Barcelona, Spain.