CME Publications
References are listed chronologically by year
and then alphabetically by author.
2000
Bills, G.F., M. Christensen, M. Powell and G. Thorn. 2000. Saprobic soil fungi, In:
Measuring and monitoring biodiversity: standard methods for fungi, G.M. Mueller, G.F.
Bills and M. Foster, eds. Smithsonian Institution Press, Washington (In press).
Evtushenko, L.I., V.V. Taran, V.N. Akimov, R.M. Kroppenstedt, J.M. Tiedje, and E.
Stackebrandt. 2000. Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov.,
nom. rev., and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov. Int.
J. Syst. Evol. Microbiol. (In press).
Evtushenko, L.I., L.V. Dorofeeva, S.A. Subbotin, J.R. Cole, and J.M. Tiedje. 2000.
Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and
reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex
Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984
with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov. Int. J.
Syst. Evol. Microbiol. (In press).
Flynn, S. J., Löffler, F. E., and J. M. Tiedje. 2000. Microbial community changes
associated with a shift from reductive dechlorination of PCE to
reductive dechlorination of cis-DCE and VC. Environ. Sci. Technol. 34:1056-1061.
Hibbett, D.S. and R.G. Thorn. 2000. Homobasidiomycetes. In: The Mycota, vol. VII,
D.J. McLaughlin, ed. Springer-Verlag, New York (In press).
Löffler, F. E., Q. Sun, J. Li, and J. M. Tiedje. 2000. 16S rRNA Gene-based detection of
tetrachloroethene (PCE)-dechlorinating Desulfuromonas and
Dehalococcoides species. Appl. Environ. Microbiol. 66: Appl. Environ. Microbiol. 66:1369-1374.
1999
Adriaens, P. 1999. Kritische analyse von natural (bio)attenuation raten und modellen:
Anwendung auf aerobe und anaerobe prozessen (in German). Dechema Symposium on
Natural Attenuation, Frankfurt a.M., Germany.
Adriaens, P., A.L. Barkovskii, and I.D. Albrecht. 1999. Fate of chlorinated aromatic
compounds in soils and sediments. In: D.C. Adriano, J.-M. Bollag, W.T. Frankenberger,
and R. Sims (Eds), Bioremediation of contaminated soils, Soil Science Society of
America/American Society of Agronomy Monograph, Soil Science Society of America
Press, Madison WI. In Press.
Adriaens, P., Q.S. Fu, I.D. Albrecht, and A.L Barkovskii. 1999. Effects of sediment
biogeochemistry on dioxin dechlorination patterns: The New York-New Jersey Estuary.
Short Paper Dioxin '99, Venice Italy.
Albrecht, I.D., A.L. Barkovskii, and P. Adriaens. 1999. Production and dechlorination
of 2,3,7,8-tetrachloro-dibenzo-p-dioxin (TCDD) in historically-contaminated estuarine
sediments. Environ. Sci. Technol. 33: 737-744.
Bennett, A.F., and R.E. Lenski. 1999. Experimental evolution and its role in
evolutionary physiology. American Zoologist 39:346-362.
Bohannan, B.J.M., and R.E. Lenski. 1999. Effect of prey heterogeneity on the response
of a model food chain to resource enrichment. The American Naturalist 153:73-82.
Bruns, M.A., J.R. Stephen, G.A. Kowalchuk, J.I. Prosser and E.A. Paul. 1999.
Comparative diversity of ammonia oxidizer 16S rRNA gene sequences in native, tilled, and
successional soils. Appl. Environ. Microbiol. 65:2994-3000.
Cavigelli, M.A. and G.P. Robertson. 1999. The functional significance of denitrifier
community composition in a terrestrial ecosystem. Ecology (In press).
Cavigelli, M.A. and G.P. Robertson. 1999. The role of denitrifier diversity in rates of
nitrous oxide consumption in a terrestrial ecosystem. Soil Biology and Biochemistry
(Submitted).
Cosper, N.J., C.V.M. Stalhanske, R.E. Saari, R.P. Hausinger, and R.A. Scott. 1999.
X-ray absorption spectroscopic analysis of Fe(II) and Cu(II) forms of an herbicide-
degrading a-ketoglutarate dioxygenase. J. Biol. Inorg. Chem. 4:122-129.
Dazzo, F.B., Y.G. Yanni, R.Rizk, F. de Bruijn, V. Corich, A. Squartini, P. Mateos, E.
Martinez-Molina, J. Biswas, J.K. Ladha, J. Weinman, B. Rolfe, A. Hartmann, O.
Glagoleva, M. Vega-Hernandez, R.I. Hollingsworth, M. Leon-Barrios, and R. Perez-
Galdona. 1999. Ecology and plant growth-promoting activities of the natural association
between Rhizobium leguminosarum bv. trifolii and rice roots. In: E. Martinez-Romero and
G. Hernandez, eds., Highlights in Nitrogen Fixation Research, pp. 101-104,
Kluwer/Plenum Publishers, NY.
Dazzo, F., and J. Wopereis. 1999. Unraveling the infection process in the Rhizobium-
legume symbiosis. In: E. Triplett (ed.), Prokaryotic nitrogen fixation: a model system for
the analysis of a biological process. Horizon Scientific Press, (In press).
Dazzo, F.B., Y.G. Yanni, R. Rizk, F. de Bruijn, J. Rademaker, A. Squartini, V. Corich,
P. Mateos, E. Martinez-Molina, E. Velazquez, J. Biswas, R. Hernandez, J.K. Ladha, J.
Hill, J. Weinman, B. Rolfe, M. Vega-Hernandez, J.J. Bradford, R.I. Hollingsworth, P.
Ostrom, E. Marshall, T. Jain, G. Orgambide, S. Philip-Hollingsworth, E. Triplett, K.
Malik, J. Maya-Flores, A. Hartmann, M. Umali-Garcia, and M.L. Izaguirre-Mayoral.
1999. Progress in multi-national collaborative studies on the beneficial association between
Rhizobium leguminosarum bv. trifolii and rice. In: J.K. Ladha and M. Peters (eds.),
Assessing opportunities for nitrogen fixation in rice. International Rice Research Institute,
Manila, The Phillipines, (In press).
De Visser, J.A.G.M., C.W. Zeyl, P.J. Gerrish, J.L. Blanchard, and R.E. Lenski. 1999.
Diminishing returns from mutation supply rate in asexual populations. Science 283:404-
406.
Dean, S.M., J.M. Lendvay, M. Barcelona, P. Adriaens, and N.D. Katopodes. 1999. The
use of multilevel sampling wells to monitor groundwater and contaminant discharge in a
surface water. Groundwater Monitoring and Remediation (GWMR). (In press).
Dedysh, S.N., W. Liesack, V.N. Khmelenina, N.E. Suzina, Y.A. Trotsenko, J.D.
Semrau, A.M. Abing, N.S. Panikov and J.M. Tiedje. 1999. Methylocella palustris gen.
nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs,
representing a novel subtype of serine pathway methanotrophs. Int'l. J. Syst. Bacteriol.
(In press).
Fernandez, A., S. Huang, S. Seston, J. Xing, R. Hickey, C. Criddle and J. Tiedje. 1999.
How stable is stable? Function versus community composition. Appl. Environ. Microbiol.
65:3697-3704.
Fu, Q., A.L Barkovskii, and P. Adriaens. 1999. Reductive transformation of dioxins: an
assessment of the contribution of dissolved organic matter to dechlorination reactions.
Environ. Sci. Technol. (In press).
Garrity, G.M. and J.C. Hunter-Cevera. 1999. Bioprospecting in the developing world.
Current Opinions in Microbiology. Current Opinion in Microbiology, 2:236-240
Hausinger, R.P., and P.A. Karplus. 1999. Use of urea-based fertilizers to stimulate plant
growth. NRI Research Highlights. U. S. Dept. Agric. (In press).
Hogan, D.A., T.A. Auchtung, and R.P. Hausinger. 1999. Cloning and characterization
of a sulfonate/a-ketoglutarate dioxygenase from Saccharomyces cerevisiae. J. Bacteriol.
(In press).
Hrywna, Y., T.V. Tsoi, O.V. Maltseva, J.F. Quensen III and J.M. Tiedje. 1999.
Construction and characterization of two recombinant bacteria that grow on ortho- and
para-substituted chlorobiphenyls. Appl. Environ. Microbiol. 65:2163-2169.
Leadbetter, J.R., T.M. Schmidt, J.R. Graber, and J.A. Breznak. 1999. Acetogenesis
from H2 plus CO2 by spirochetes from termite guts. Science 283:686-689.
Lendvay, J.M., and P. Adriaens. 1999. Laboratory evaluation of temporal trends in
biogeochemical conditions at a groundwater-surface water interface. Phys. Chem. Earth,
24(6):511-516.
Lenski, R.E. 1999. Schools, society need evolutionary science (Op-ed). The Detroit
News, Sunday, March 21.
Lenski, R.E. 1999. Evolution, theory and experiments. In: J. Lederberg, editor.
Encyclopedia of Microbiology, 2nd edition. Academic Press, San Diego. (In press).
Lenski, R.E., and J.A. Mongold. 1999. Cell size, shape, and fitness in evolving
populations of bacteria. In: J.H. Brown and G.B. West, eds. Scaling in Biology. Oxford
University Press.
Lenski, R.E., C. Ofria, T.C. Collier, and C. Adami. 1999. Genome complexity,
robustness and genetic interactions in digital organisms. Nature 400:661-664.
Lilburn, T.G., T.M. Schmidt and J.A. Breznak. 1999. Phylogenetic diversity of termit
gut spirochetes. Environ. Microbiol. 1:331-346.
Löffler, F.E., J.M. Tiedje and R.A. Sanford. 1999. Fraction of electrons
consumed in electron acceptor reduction and hydrogen thresholds as indicators of
halorespiratory physiology. Appl. Environ. Microbiol. 65:4049-4056.
Lopez, F.A., J. Manglicmot, T.M. Schmidt, C. Yeh, H.V. Smith, D.A. Relman. 1999.
Molecular characterization of Cyclospora-like organisms from baboons. J. Infec. Dis.
179:670-676.
Maidak, B.L., J.R. Cole, C.T. Parker, Jr., G.M. Garrity, N. Larsen, B. Li, T.G.
Lilburn, M.J. McCaughey, G.J. Olsen, R. Overbeek, S. Pramanik, T.M. Schmidt, J.M.
Tiedje and C.R. Woese. 1999. A new version of the RDP (Ribosomal Database Project).
Nucl. Acids Res., 27:171-173.
Maltseva, O.V., T.V. Tsoi, J.F. Quensen III, M. Fukuda and J.M. Tiedje. 1999.
Degradation of anaerobic reductive dechlorination products of Aroclor 1242 by four aerobic
bacteria. Biodegradation (In press).
Marsh, T.L. 1999. Terminal restriction fragment length polymorphism (T-RFLP): an
emerging method for characterizing diversity among homologous populations of
amplification products. Curr. Opin. Microbiol. 2:323-327.
Mongold, J.A., A.F. Bennett, and R.E. Lenski. 1999. Evolutionary adaptation to
temperature. VII. Extension of the upper thermal limit of Escherichia coli. Evolution
53:386-394.
Nüsslein, K. and J.M. Tiedje. 1999. Soil bacterial community shift correlated with
change from forest to pasture vegetation in a tropical soil. Appl. Environ. Microbiol.
65:3622-3626.
Papadopoulos, D., D. Schneider, J. Meier-Eiss, W. Arber, R.E. Lenski, and M. Blot.
1999. Genomic evolution during a 10,000-generation experiment with bacteria.
Proceedings of the National Academy of Sciences, USA 96:3807-3812.
Paul, E.A., D. Harris, M. Klug, and R. Ruess. 1999. The determination of microbial
biomass. Pages 291-317 in G.P. Robertson, C.S. Bledsoe, D.C. Coleman, and P.
Sollins, eds. Standard Soil Methods for Long-Term Ecological Research. Oxford
University Press, New York (In press).
Prayitno, J., J. Stefaniak, J. McIver, J.J. Weinman, F.B. Dazzo, J.K. Ladha, W.
Baraquio, Y.G. Yanni, and B.G. Rolfe. 1999. Interactions of rice seedlings with
nitrogen-fixing bacterial isolated from rice roots. Austr. J. Plant Physiol. 26, (In press).
Romanov, V., M.T. Merski, and R.P. Hausinger. 1999. Assays for allantoinase. Anal.
Biochem. 268:49-53.
Rozen, D.E., and R.E. Lenski. 1999. Long-term experimental evolution in Escherichia
coli. VIII. Dynamics of a balanced polymorphism. The American Naturalist (In press).
Saari, R.E., D.A. Hogan, and R.P. Hausinger. 1999. Stereospecific degradation of the
phenoxypropionate herbicide dichlroprop. J. Molec. Catalysis 6:421-428.
Selig, H., K.F. Hayes, and P. Adriaens. 1999. The Role of Silica Dissolution on the
Biodegradation of Octylamine. Environ. Sci. Technol., (In Press).
Sepulveda-Torres, L. del C., N. Rajendran, M.J. Dybas and C.S. Criddle. 1999.
Generation and initial characterization of Pseudomonas stutzeri KC mutants with impaired
ability to degrade cahrbon tetrachloride. Arch. Microbiol. 171:424-429.
Sinsabaugh, R.L., M.J. Klug, H.P. Collins, P.E. Yeager, and S.O. Peterson. 1999.
Characterizing soil microbial communities. Pages 318-348 in G.P. Robertson, C.S.
Bledsoe, D.C. Coleman, and P. Sollins, eds. Standard Soil Methods for Long-Term
Ecological Research. Oxford University Press, New York (In press).
Skubal, K.L., S.K. Haack, L.J. Forney, and P. Adriaens. 1999. Effects of Dynamic
Redox Zonation on the Potential for Natural Attenuation of Trichloroethylene at a Fire-
Training Impacted Aquifer. Phys. Chem. Earth, 24(6):517-527.
Song, B., M.M. Haggblom, J. Zhou, J.M. Tiedje and N.J. Palleroni. 1999. Taxonomic
characterization of denitrifying bacteria that degrade aromatic compounds and description of
Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. Int'l. J. Syst. Bacteriol.
49:1129-1140.
Tiedje, J.M. 1999. 20 years since Dunedin: The past and future of microbial ecology.
pp. In: C.R. Bell, M. Brylinsky, P. Johnson-Green (eds.). Microbial Biosystems: New
Frontiers. (In press).
Tiedje, J.M. and J.L. Stein. 1999. Microbial Biodiversity: Strategies for its recovery.
pp.682-692. In: A.L. Demain and J. Davies (eds.). Manual of Industrial Microbiology
and Biotechnology. Amer. Soc. Microbiol., Washington, DC.
Tiedje, J.M., S. Asuming-Brempong, K. Nusslein, T.L. Marsh and S.J. Flynn. 1999.
Opening the black box of soil microbial diversity. Appl. Soil Ecol. 386:1-14.
Thorn, R.G., J.-M. Moncalvo, R. Vigalys and C.A. Reddy. 1999. Phylogenetic analyses
and the distribution of nematophagy support a monophyletic Pleurotaceae within the
polyphyletic pleurotoid-lentinoid fungi. Mycologia (In press).
Thorn, R.G. 1999. Soil fungi. In: Handbook of Soil Science, M.E. Sumner, ed. CRC
Press, Boca Raton, FL, pp. C22-C37 (In press).
Tsoi, T.V., E.G. Plotnikova, J.R. Cole, W.F. Guerin, M. Bagdasarian and J.M. Tiedje.
1999. Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142
ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Appl. Environ.
Microbiol. 65:2151-2162.
Vasi, F.K., and R.E. Lenski. 1999. Ecological strategies and fitness tradeoffs in
Escherichia coli mutants adapted to prolonged starvation. J. Genetics (In press).
Velicer, G.J. 1999. Pleiotropic effects of bacterial adaptation to a single carbon source for
growth on alternative substrates. Appl. Environ. Microbiol. 65:264-269.
Velicer, G.J., and R.E. Lenski. 1999. Evolutionary tradeoffs under conditions of
resource abundance and scarcity: experiments with bacteria. Ecology 80:1168-1179.
Velicer, G., T.M. Schmidt and R.E. Lenski. 1999. Application of traditional and
phylogenetic comparative methods to test for a tradeoff in bacterial growth rates at low
versus high substrate concentration. Microbial Ecology (In Press).
Vulic, M., R.E. Lenski, and M. Radman. 1999. Mutation, recombination and incipient
speciation of bacteria in the laboratory. Proceedings of the National Academy of Sciences,
USA 96:7348-7351.
Wall, D.B., D.M. Lubman and S.J. Flynn. 1999. Rapid profiling of induced proteins in
bacteria using MALDI-TOF mass spectrometric detection of non-porous RP HPLC
separated whole cell lysates. (Submitted).
Witt, M.E., M.J. Dybas, R.M. Worden and C.S. Criddle. 1999. Motility-enhanced
bioremediation of carbon tetrachloride-contaminated aquifer sediments. Environ. Sci.
Tech. 33:2958-2964.
Ye, D., J.F. Quensen, III, J.M. Tiedje and S.A. Boyd. 1999. 2-Bromoethanesulfonate,
sulfate, molybdate, and ethanesulfonate inhibit anaerobic dechlorination of
polychlorobiphenyls by pasteurized microorganisms. Appl. Environ. Microbiol. 65:327-
329.
Zhao, X., M.J. Szafranski, M.A. Maraqa, and T.C. Voice. 1999. Sorption and
bioavailability of carbon tetrachloride in a low organic content sandy soil. Environ. Tox.
Chem. 18(8).
1998
Albrecht, I.D., A.L. Barkovskii, and P. Adriaens. 1998. Stimulation of PCDD
dechlorination in historically-contaminated sediments. In Johanson, N., A. Bergman, D.
Broman, H. Hakanson, B. Janson, E.K. Wehler, L. Poellinger, and B. Wahlstron (Eds.),
Organohalogen compounds 36, pp. 437-441. Swedish Environmental Protection Agency,
Stockholm Sweden.
Bratina, B.J., B. Stevenson, W. J. Green and T.M. Schmidt. 1998.
Manganese reduction by microbes from oxic regions of the Lake Vanda
(Antarctica) water column. Applied and Environmental Microbiology
64: 3791-3797.
Bruns, M.A., M.A. Fries, J.M. Tiedje and E.A. Paul. 1998. Functional gene
hybridization patterns of terrestrial ammonia-oxidizing bacteria. Microbial Ecology 36:293-
302.
Buckley, D.H., J.R. Graber and T.M. Schmidt. 1998. Phylogenetic analysis
of nonthermophilic Crenarchaeota and their diversity and abundance in
soils. Applied and Environmental Microbiology 64: 3781-3787.
Button, D.K., B.R. Robertson, L. Pinto, P.W. Lepp and T.M. Schmidt.
1998. A high affinity, small, dilute, extinction-culture isolate
having kinetic constants compatible with growth at ambient
concentrations of dissolved nutrients in seawater. Applied and
Environmental Microbiology 64:4467-4476.
Dazzo, F.B., Y.G. Yanni, A. Squartini, P. Mateos, F. de Bruijn, T. Schmidt, J.K. Ladha,
B. Rolfe, and A. Hartmann. 1998. Natural beneficial association of Rhizobium
leguminosarum bv. trifolii and rice roots and its relevance to sustainable agriculture. In: C.
Elmerich, A. Kondorosi, and W. Newton (eds), Biological Nitrogen Fixation for the 21st
Century. pp. 627-628, Kluwer Academic Publishers, Dordrecht.
Dedysh, S.N., N.S. Panikov, W. Liesack, R. Grobkopf, J. Zhou and J.M. Tiedje. 1998.
Isolation of acidophilic methane-oxidizing bacteria from Northern peat wetlands. Science
282:281-284.
Dedysh, S.N., N.S. Panikov and J.M. Tiedje. 1998. Acidophilic
methanotrophic communities from Sphagnum peat bogs.
Appl. Environ. Microbiol. 64:922-929.
Dybas, M.J., M. Barcelona, S. Bezborodnikov, S. Davies, L. Forney, H. Heuer, O.
Kawka, T. Mayotte, L. Sepulveda-Torres, K. Smalla, M. Sneathen, J. Tiedje, T. Voice,
D.C. Wiggert, M.E. Witt and C.S. Criddle. 1998. Pilot-scale evaluation of
bioaugmentation for in-situ remediation of a carbon tetrachloride-contaminated aquifer.
Environ. Sci. Technol. 32:3598-3611.
Fulthorpe, R.R., A.N. Rhodes and J.M. Tiedje. 1998. High levels of
endemicity apparent in 3-chlorobenzoate degrading soil bacteria. Appl.
Environ. Microbiol. (IN Press).
Huberty, L.E., K.L. Gross, and C.J. Miller. 1998. Effects of nitrogen addition on
successional dynamics and diversity in Michigan old-fields. J. Ecol. 86:794-803.
Jackson, J.H., R. George, H.O. Adeyemi, M.A. Winrow, P.A. Herring, J.J.
Caguiat, C.F. Mulks, R.Srikanth, S.H. Harrison and R.E. Mickens. 1998.
Characterization of base periodicities in protein-coding genes.
J. Biol. Systems (In Press).
Kim, K. S., T. G. Lilburn, M. J. Renner and J. A. Breznak. 1998. arfI and
arfII: two genes encoding a-L-arabinofuranosidases in Cytophaga
xylanolytica. Appl. Environ. Microbiol. 64:1919-1923.
Leadbetter, J. R., L. D. Crosby and J. A. Breznak. 1998.
Methanobrevibacter filiformis sp. nov., a filamentous methanogen from
termite hindguts. Arch. Microbiol. 169:287-292.
Lendvay, J.M., S.M. Dean and P. Adriaens. 1998. Temporal and spatial trends in
biogeochemical conditions at a groundwater-surface water interface: implications for natural
bioattenuation. Environ. Sci. Technol. 32:3472-3478.
Lendvay, J.M., W.A. Sauck, M.L. McCormick, M.J. Barcelona, D.H. Kampbell, J.T.
Wilson, and P. Adriaens. 1998. Geophysical characterization, redox zonation, and
contaminant distribution at a groundwater-surface water interface. Wat. Resour. Res.
34:3545-3559.
Lenski, R.E. 1998. Bacterial evolution and the cost of antibiotic resistance. International
Microbiology 1:265-270.
Lenski, R.E., J.A. Mongold, P.D. Sniegowski, M. Travisano, F. Vasi, P.J.
Gerrish, and T.M. Schmidt. 1998. Evolution of competitive fitness in
experimental populations of E. coli: What makes one genotype a better
competitor than another? Antonie van Leeuwenhoek 73:35-47.
Lepp, P.W. and T.M. Schmidt. 1998. Nucleic acid content of
Synechococcus spp. during growth in continuous light and light:dark
cycles. Archives of Microbiology 170:201-207.
Liu, W-T, T.L. Marsh, and L.J. Forney. 1998. Determination of microbial diversity of
anaerobic-aerobic activated sludge by a novel molecular biological technique. Proceedings
Second International Conference on Microorganisms in Activated Sludge and Biofilm
Processes. Wat. Sci. Tech. 37.
Lopez, F.A. J. Manglicmot, T.M. Schmidt, C. Yeh, H.V. Smith, D.A. Relman.
1998. Molecular characterization of Cyclospora-like organisms
from baboons. Journal of Infectious Diseases. In Press.
Lynam, M., J. Damborsky, M. Kuty, and P. Adriaens. 1998. Molecular orbital
calculations to probe mechanism of reductive dechlorination of polychlorinated dioxins.
Environ. Toxicol. Chem. 17(6):998-1005.
McGowan, C., R. Fulthorpe, A. Wright and J.M. Tiedje. 1998. Evidence for interspecies
gene transfer in the evolution of 2,4-dichlorophenoxyacetic acid degraders. Appl. Environ.
Microbiol. 64:4089-4092.
Moyer, C.L., J.M. Tiedje, F.C. Dobbs and D.M. Karl. 1998. Diversity of
deep-sea hydrothermal vent Archaea at Loihi Seamount, Hawaii.
Deep Sea Research (In Press).
Nuesslein, K. and J.M. Tiedje. 1998. Characterization of the dominant
and rare members of a young soil bacterial community with small-subunit
ribosomal DNA amplified from DNA fractionated on the basis of its
guanine and cytosine composition. Appl. Environ. Microbiol. (In Press).
Princic, A., I. Mahne, F. Megusar, E.A. Paul and J.M. Tiedje. 1998. Effects of pH and
oxygen and ammonium concentrations on the community structure of nitrifying bacteria
from wastewater. Appl. Environ. Microbiol. 64:3584-3590.
Renner, M. J. and J. A. Breznak. 1998. Purification and properties of
ArfI, an a-L-arabinofuranosidase from Cytophaga xylanolytica. Appl.
Environ. Microbiol. 64:43-52.
Santo Domingo, J.W., M.G. Kaufman, M.J. Klug, W.E. Holben, D. Harris
and J. M. Tiedje. 1998. Influence of diet on the structure and function
of the bacterial hindgut community of crickets. Molec. Ecol. (In Press)
Santo Domingo, J.W., M.G. Kaufman, M.J. Klug and J. M. Tiedje. 1998.
Characterization of the cricket hindgut microbiota using rRNA-targeting probes.
Appl. Environ. Microbiol. (In Press).
Stevenson, B. and T.M. Schmidt. 1998. Growth rate dependent
accumulation of RNA from plasmid-borne ribosomal RNA operons. Journal of
Bacteriology 180:1970-1972.
van Elsas, J.D., B.B. McSpadden Gardner, A.C. Wolters and E. Smit. 1998.
Isolation, characterization, and transfer of cryptic gene-mobilizing palsmids
in the wheat rhizoshere. Appl. Environ. Microbiol. 64:880-889.
Velicer, G.J., L. Kroos, and R.E. Lenski. 1998. Loss of social behaviors by
Myxococcus xanthus during evolution in an unstructured habitat. Proceedings of the
National Academy of Sciences, USA 95:12376-12380.
Wischnak, C., F. E. Löffler, J. Li, J. W. Urbance, and R. Müller. 1998. Isolation and
characterization of a Pseudomonas species that degrades
medium length a,w-dichloroalkanes. Appl. Environ. Microbiol. 64:3507-3511.
1997
Bratina, B.J., M. Viebahn, and T.M. Schmidt. 1997. Achieving
specificity in nucleic acid hybridizations using nuclease S1. Methods in
Molecular and Cellular Biology 6:107-115.
Brussaard, L., V.M. Behan-Pelletier, D.E. Bignell, V.K. Brown, W.A.M.
Didden, P.I. Folgarait, C. Fragoso, D.W. Freckman, V.V.S.R. Gupta,
T. Hattori, D. Hawksworth, C. Klopatek, P. Lavelle, D. Malloch, J. Rusek,
B. Soderstrom, J.M. Tiedje and R.A. Virginia. 1997. Biodiversity and
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